Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs111639800 | chr16:2945581 | A/G | 2.18E-5 | 501 | 36.9 | 40.25 | 1.98 | KM Plot |
KIRC | rs111659288 | chr19:46311861 | GA/G | 8.27E-8 | 495 | 38.83 | 28.65 | 1.77 | KM Plot |
KIRC | rs111701371 | chr15:24453825 | C/T | 1.54E-8 | 500 | 37.5 | 31.7 | 3.3 | KM Plot |
KIRC | rs111748708 | chr2:109481132 | C/T | 1.28E-11 | 508 | 37.7 | 27.4 | 2.3 | KM Plot |
KIRC | rs111772666 | chr11:1547589 | G/A | 9.31E-5 | 503 | 37.47 | 37.37 | 5.47 | KM Plot |
KIRC | rs111824736 | chr19:14980702 | G/A | 6.51E-7 | 508 | 37.42 | 39.85 | 1.73 | KM Plot |
KIRC | rs111858535 | chr9:92168526 | TC/T | 2.63E-5 | 507 | 36.88 | 48.2 | 10.62 | KM Plot |
KIRC | rs111874114 | chr15:24335454 | C/T | 1.76E-8 | 501 | 37.42 | 32.7 | 3.3 | KM Plot |
KIRC | rs11188 | chr16:23687156 | A/G | 6.8E-10 | 508 | 37.42 | 37.47 | 2.43 | KM Plot |
KIRC | rs111886828 | chr16:15806658 | C/CTGGCCAT | 0.000109 | 500 | 30.63 | 45.63 | 37.35 | KM Plot |
KIRC | rs111990309 | chr9:92167159 | A/G | 3.96E-5 | 503 | 37.33 | 47.17 | 10.62 | KM Plot |
KIRC | rs112056801 | chr15:24341992 | G/T | 1.82E-8 | 502 | 37.42 | 35.83 | 3.3 | KM Plot |
KIRC | rs112073313 | chr3:48373689 | A/G | 7.53E-6 | 488 | 37.47 | 39.03 | 21.73 | KM Plot |
KIRC | rs112263997 | chr19:46314979 | C/A | 7.07E-8 | 500 | 38.05 | 28.65 | 1.77 | KM Plot |
KIRC | rs112355306 | chr2:67506465 | G/C | 1.75E-7 | 500 | 37.42 | 36.65 | 2.03 | KM Plot |